Python API Reference
Lib_pod5 Reference
Submodules
- api_utils
- reader
ArrowTableHandleReadRecordReadRecord.__init__()ReadRecord.byte_countReadRecord.calibrate_signal_array()ReadRecord.calibrationReadRecord.calibration_digitisationReadRecord.calibration_rangeReadRecord.end_reasonReadRecord.end_reason_indexReadRecord.has_cached_signalReadRecord.median_beforeReadRecord.num_minknow_eventsReadRecord.num_reads_since_mux_changeReadRecord.num_samplesReadRecord.poreReadRecord.predicted_scalingReadRecord.read_idReadRecord.read_numberReadRecord.run_infoReadRecord.run_info_indexReadRecord.sample_countReadRecord.signalReadRecord.signal_for_chunk()ReadRecord.signal_paReadRecord.signal_rowsReadRecord.start_sampleReadRecord.time_since_mux_changeReadRecord.to_read()ReadRecord.tracked_scaling
ReadRecordBatchReadRecordBatch.__init__()ReadRecordBatch.cached_sample_count_columnReadRecordBatch.cached_samples_columnReadRecordBatch.columnsReadRecordBatch.get_read()ReadRecordBatch.num_readsReadRecordBatch.read_id_columnReadRecordBatch.read_number_columnReadRecordBatch.reads()ReadRecordBatch.set_cached_signal()ReadRecordBatch.set_selected_batch_rows()
ReadRecordV3ColumnsReadRecordV3Columns.calibration_offsetReadRecordV3Columns.calibration_scaleReadRecordV3Columns.channelReadRecordV3Columns.end_reasonReadRecordV3Columns.end_reason_forcedReadRecordV3Columns.median_beforeReadRecordV3Columns.num_minknow_eventsReadRecordV3Columns.num_reads_since_mux_changeReadRecordV3Columns.num_samplesReadRecordV3Columns.pore_typeReadRecordV3Columns.predicted_scaling_scaleReadRecordV3Columns.predicted_scaling_shiftReadRecordV3Columns.read_idReadRecordV3Columns.read_numberReadRecordV3Columns.run_infoReadRecordV3Columns.signalReadRecordV3Columns.startReadRecordV3Columns.time_since_mux_changeReadRecordV3Columns.tracked_scaling_scaleReadRecordV3Columns.tracked_scaling_shiftReadRecordV3Columns.well
ReaderReader.__init__()Reader.batch_countReader.close()Reader.file_identifierReader.file_versionReader.file_version_pre_migrationReader.get_batch()Reader.inner_file_readerReader.is_vbz_compressedReader.num_readsReader.pathReader.read_batches()Reader.read_idsReader.read_ids_rawReader.read_tableReader.reads()Reader.reads_table_versionReader.run_info_tableReader.signal_batch_row_countReader.signal_tableReader.writing_software
SignalSignalRowInfo
- repack
RepackerRepacker.__init__()Repacker.add_all_reads_to_output()Repacker.add_output()Repacker.add_selected_reads_to_output()Repacker.batches_completedRepacker.batches_requestedRepacker.finish()Repacker.is_completeRepacker.pending_batch_writesRepacker.reads_completedRepacker.reads_requestedRepacker.reads_sample_bytes_completedRepacker.wait()Repacker.waiter()
- signal_tools
- pod5_types
BaseReadBaseRead.__init__()BaseRead.calibrationBaseRead.end_reasonBaseRead.median_beforeBaseRead.num_minknow_eventsBaseRead.num_reads_since_mux_changeBaseRead.poreBaseRead.predicted_scalingBaseRead.read_idBaseRead.read_numberBaseRead.run_infoBaseRead.start_sampleBaseRead.time_since_mux_changeBaseRead.tracked_scaling
CalibrationCompressedReadEndReasonEndReasonEnumPoreReadRunInfoRunInfo.__init__()RunInfo.acquisition_idRunInfo.acquisition_start_timeRunInfo.adc_maxRunInfo.adc_minRunInfo.context_tagsRunInfo.experiment_nameRunInfo.flow_cell_idRunInfo.flow_cell_product_codeRunInfo.protocol_nameRunInfo.protocol_run_idRunInfo.protocol_start_timeRunInfo.sample_idRunInfo.sample_rateRunInfo.sequencer_positionRunInfo.sequencer_position_typeRunInfo.sequencing_kitRunInfo.softwareRunInfo.system_nameRunInfo.system_typeRunInfo.tracking_id
ShiftScalePair
- writer
Module contents
POD5 Format
Bindings for the POD5 file format