pod5_recover

Tool for recovering truncated pod5 files

class RecoveredData(signal_rows: int = 0, reads: int = 0, run_infos: int = 0, files_with_errors: int = 0)[source]

Bases: object

Holds info about recovered data.

__init__(signal_rows: int = 0, reads: int = 0, run_infos: int = 0, files_with_errors: int = 0) → None

files_with_errors: int = 0

reads: int = 0

run_infos: int = 0

signal_rows: int = 0

do_consistency_check(path: Path, recovered: RecoveredData) → bool[source]: Count the number of recoverd records in path updating recovered. Returns True is this file was successfully recovered

is_file_ok(path: Path) → bool[source]

main()[source]

recover_pod5(inputs: List[Path], force_overwrite: bool, recursive: bool)[source]: Given a list of truncated pod5 files, recover their data.